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Mendeley Achieves Version 1.0

July 26, 2011, 3:00 pm

Mendeley logoLongtime ProfHacker readers will already be familiar with Mendeley, the collaboration-based research manager launched in 2009. Last summer, Julie wrote an introduction to “Using Mendeley for Research Management, which found much to commend while also noticing that the userbase for Mendeley tilts toward the sciences, whereas the userbase for Zotero tilts toward the humanities. Even Zotero users might be interested in Mendeley’s iOS app, however, as Mark has shown how to use it to access Zotero libraries from an iPad.

Today, Mendeley has released the 1.0 version of their cross-platform desktop software, which had already been downloaded over 1 million times during the beta. Those users have so far uploaded over 100 million papers to its collective library. The software makes compiling bibliographies incredibly easy, as it tries to extract bibliographic data from both upload articles and any articles cited therein. You can then share your library in various ways.

Yesterday, the company released this video that explains the basic concept:

What is Mendeley? from Mendeley on Vimeo.

(For more video resources, see also their YouTube channel for Mendeley Minutes.)

Mendeley performs just about all the functions you would expect a reference/citations manager to do: It organizes your bibliography and outputs it in various forms (with native plug-ins for Word and Open Office); it lets you read and annotate PDFs; it syncs your library across multiple devices; it lets you create groups to share articles with colleagues; and much else–it even offers recommendations of new articles that might interest you.

New features include the ability to share annotations of articles, better support for nested folders, a paper-duplication detector, and various improvements the PDF viewer and file organizer. Mendeley Desktop is, at least on my Mac, a sleek, thoughtfully designed app.

It’s still the case, I think, that Mendeley will find (at least for now) more immediate users in the sciences, judging by a small detail: In the sign-up menu, the “humanities” is its own category, with a decidedly mixed bag of sub-disciplines grouped underneath. Philosophy, meanwhile, is an equal menu item to the humanities in general. (You can also see this in the # of results on humaniites topics found in Mendeley’s databases, and in the relative ease or difficulty with which some humanities titles are imported.)

Also, for people committed to open-source projects, it is worth noting that Mendeley is not open-source, while Zotero is. Having said that, Mendeley has released an API, and is even sponsoring a contest to build new Creative Commons-licensed apps. It would be hard to accuse them of locking down data.

Mendeley’s new app is definitely worth a look if you are in the market for a citation manager or are otherwise looking to to streamline your research. To me, Mendeley and Zotero are the clear first choices for this kind of tool. (Tools like DevonThink and Evernote strike me as serving slightly different functions.)

Do you use Mendeley for your research library? How has your experience been? Let us know in comments!

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  • heathermwhitney

    I am an enthusiastic user of Mendeley. :-)

  • http://www.facebook.com/profile.php?id=1447459851 Michael Gizzi

    Only recently started using it, but it is by far the best bibliographic database I have ever used.   I am building a series of databases with it, based on different research projects, and I love the ability to link actual PDFs to it – and to store them electronically as well.  Very very nice.

    I am a social scientist doing work in criminal justice and political science.

  • http://www.about.me/cplong Christopher Long

    I have been thinking a lot about how Mendeley fits into, and fails to fit into, my research workflow. I have written here in some detail about it: 

    http://www.personal.psu.edu/cpl2/blogs/TheLongRoad/2010/12/evolving-digital-research-ecos.html
    More recently, I gave a presentation about how I use Zotero and Mendeley together in doing collaborative research in Philosophy with my research assistant:

    http://www.personal.psu.edu/cpl2/blogs/cplportfolio/2011/07/collaborative-research-in-phil.html

    It is frustrating to have what could be a superior product like Mendeley hampered by ongoing functionality issues that should be simple to fix.  

    Two examples are: First, they have a proprietary way of doing pdf annotations that do not translate into other standard pdf annotation programs like Acrobat or, on the iPad, GoodReader.  That makes it difficult to go all in with Mendeley.  Second, their plug-in for Word for the Mac adds html code to references in footnotes, for example in Chicago Style, that renders it unusable for some of us in the Humanities.  Both issues are well known in the Mendeley support forum, and I would have hoped that they would have addressed them prior to the 1.0 release.

    Still, it is a powerful program and I hold out hope that it will be a more effective solution for me as it matures.

  • http://www.facebook.com/zponder Zach Ponder

    Loved this program since the early betas. The developers really have done an excellent job of addressing issues and fixing bugs as they’ve been uncovered. Really has enhanced my workflow/organization. All that being said, it’s unfortunate that Mendeley has completely dropped PowerPC support. I realize that it’s an old machine, but for goodness’ sake it still works (quite well I might add)!!!! Add it to the growing list of programs (Firefox, I’m looking at you) that have completely left us lowly PowerPC users in the past. Am I the only one?

  • drgunn

    Chris, it’s not so much an issue with a proprietary annotation format as it is that there’s no accepted standard for making collaborative group annotations on a PDF. If it was just one person annotating a document, yes, we would write the annotations in the file using XMP, but that doesn’t work with group annotations. This is something we very much want to figure out, but we just aren’t there yet and we need to work with the developers of other third-party annotation tools to ensure everything works properly.

  • http://twitter.com/marciopupin Marcio Pupin Mello

    Congratulations to the Mendeley team for reaching version 1.0!
    Cheers,
    Marcio
    http://www.dsr.inpe.br/~mello

  • http://www.about.me/cplong Christopher Long

    I appreciate this clarification and support the idea of collaborative annotations. I am trying to be patient as these things develop, but it is frustrating to see all the possibilities even as our ability to implement them in a coherent way lags.  In the meantime, I want to be able to take my own annotations with me whatever program I use, and share them with others across software applications.  I recognize that Mendeley is working hard on these things, which is one reason I continue to advocate for its adoption with my colleagues.

  • drgunn

    Thanks, Chris. I know you’ve been supportive of us from the early stages and we appreciate it.

    One part of the puzzle is solved already. You can take your annotations with you. When you’re looking at a document in the PDF viewer, you’ll see there’s a new option on the File Menu called Export PDF with Annotations. This will export your annotations in a form that is readable by other PDF readers. This will change the file, so if you re-import it, you’ll now have two copies of that file in your library, but you can re-merge them with our duplicates tool. This needs a lot of improvement, but at least the export part does work.

  • http://twitter.com/dubikan Dubi Kanengisser

    I’ve used Zotero before, and never really got the hang of it, but as soon as I tried Mendeley I was hooked. It really streamlined my work (I’m in the social sciences) – the ability to annotate documents right within the program, the accessibility of fulltext search on both original text and notes, the tagging system – they’ve all been incredibly useful for me, especially since I tend to be very undisciplined in my organization. The ability to highlight and annotate image-PDFs (rather than just PDFs where the text is machine readable) has been a veritable treasure when dealing with my archival work and other primary sources.
    All in all, I’ve been an enthusiastic user of Mendeley for over a year now, and I’ve loved every minute of it.

  • FrugalEcologist

    I really enjoy mendeley for the ability to organize PDFs and bibliographic info (I was long envious of Mac-only Papers).

    BUT I am unable to use Mendeley for actually creating lit cited in manuscripts as the plug in always causes my document to crash. I am using windows 7 & word 2010. Anyone else have this issue? My workaround is to use mendeley for organizing and zotero for writing which is pretty inefficient.

  • drgunn

    I know lots of people actually use exactly that setup, so I would email support@mendeley.com with a log file http://www.mendeley.com/faq/#locate-database and see if they can fix you up. Sometimes it’s specific PDFs that cause the problem.

  • mj___

    I was lucky to find Mendeley in the early times of my PhD. I am now using it everyday for my research. The Mendeley Team is very active ad listen to the users needs. Congratulations for this version 1.0!

  • maryalice16

    Mendeley is amazing and I couldn’t imagine a world without it. Highly recommend to my fellow PhD students, all researchers, and scholars!

  • http://twitter.com/gurulibrarian Diana Moore

    I have been working with Zotero and Endnote, having just started a PhD program last semester.  I downloaded Mendeley yesterday and was amazed at how quickly and easily I was able to import my entire PDF library of last semester’s research!  I downloaded the app on my iPad, and it is easy to use with PDF Expert.  I am impressed!  I will continue to use Mendeley and hope it will be my tool of choice for managing my PDF library.

  • squawky

    Started using Mendeley this summer – still not utilizing the full potential (I use Pages for writing, so no auto-citing for now) and I don’t sync/store documents online much either… but I’m converted from my old reference manager (I was working with Yep for a while, which appears to be no longer in development – and not free, either.)

    I like the mobile integration (I can upload PDF’s and yank them down to my iPad for reading away from the laptop) – and find the web browser integration very useful: with the extension installed, I can yank information about papers I want to read directly from abstract searches.  Useful for storing the “I really need to read this but don’t have time right this minute” papers, especially when away from campus and immediate online access.

    Have had issues having information about older PDF’s imported properly, especially the keywords – and using Google Scholar searches to fill out that info is hit or miss.  But Mendeley has been the best solution to reference management that I could find for me (I’m in the physical sciences.)

  • windfix

    Committed to open source, I will stick to Zotero.

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